reproducibility Questions – Bioinformatics India

29

1 answer ✓ 6 views

How to use Docker and Singularity to containerize bioinformatics tools for reproducibility

I want to make my bioinformatics analysis fully reproducible using containers. My HPC cluster doesn’t allow Docker (requires root), but Singularity is available. How do…

containers docker hpc reproducibility singularity asked 4 days ago by

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44

1 answer ✓ 2 views

How to build a reproducible bioinformatics pipeline with Snakemake

I want to build a RNA-seq analysis pipeline that I can share with collaborators and rerun on different datasets without manually changing paths. I’ve heard…

pipeline python reproducibility snakemake workflow asked 1 week ago by

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39

1 answer ✓ 4 views

How to create and manage conda environments for reproducible bioinformatics analysis

I keep running into dependency conflicts when installing bioinformatics tools. Different tools require different Python versions and library versions. How should I use conda environments…

bioinformatics conda dependencies environment-management reproducibility asked 2 weeks ago by

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