msa Questions – Bioinformatics India

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How do I calculate pairwise sequence identity from a multiple sequence alignment in BioPython?

I have a multiple sequence alignment (MSA) in FASTA format and I want to calculate pairwise percent identity for all pairs of sequences. I’m using…

biopython msa percent-identity python sequence-alignment asked 2 days ago by

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How to perform multiple sequence alignment with MUSCLE5 and prepare it for phylogenetic analysis

I have 120 protein sequences from orthologous genes across different fungal species. I need to create a multiple sequence alignment for phylogenetic analysis. Should I…

mafft msa multiple-sequence-alignment muscle phylogenetics asked 1 month ago by

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